Search Geneontologies

Geneontologies

GO ID Ontology GO Term Term Definition Proteins

GO:0047256

MF

lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity

Catalysis of the reaction: cytolipin-H + UDP-N-acetyl-D-glucosamine = N-acetyl-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide + UDP.

B3GNT5

GO:0047280

MF

nicotinamide phosphoribosyltransferase activity

Catalysis of the reaction: diphosphate + nicotinamide mononucleotide = 5-phospho-alpha-D-ribose 1-diphosphate + H(+) + nicotinamide.

NAMPT

GO:0047288

MF

monosialoganglioside sialyltransferase activity

Catalysis of the reaction: D-galactosyl-N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosylceramide + CMP-N-acetylneuraminate = N-acetylneuraminyl-D-galactosyl-N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosylceramide + CMP.

ST3GAL4

GO:0047290

MF

(alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity

Catalysis of the reaction: alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-(1->3)-N-acetyl-D-galactosaminyl-R + CMP-N-acetyl-beta-neuraminate = alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-(1->3)-[N-acetyl-alpha-neuraminyl-(2->6)]-N-acetyl-D-galactosaminyl-R + CMP.

ST6GALNAC4

GO:0047293

MF

4-hydroxybenzoate nonaprenyltransferase activity

Catalysis of the reaction: p-hydroxybenzoate + solanesyl pyrophosphate = nonaprenyl-4-hydroxybenzoate + diphosphate.

COQ2

GO:0047298

MF

(S)-3-amino-2-methylpropionate transaminase activity

Catalysis of the reaction: (S)-3-amino-2-methylpropanoate + 2-oxoglutarate = 2-methyl-3-oxopropanoate + L-glutamate.

ABAT

GO:0047322

MF

[hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity

Catalysis of the reaction: [3-hydroxy-3-methylglutaryl-CoA reductase (NADPH)] + ATP = [3-hydroxy-3-methylglutaryl-CoA reductase (NADPH)] phosphate + ADP.

PRKAA2

GO:0047325

MF

inositol tetrakisphosphate 1-kinase activity

Catalysis of the reaction: 1D-myo-inositol 3,4,5,6-tetrakisphosphate + ATP = 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ADP.

ITPK1

GO:0047372

MF

acylglycerol lipase activity

Catalysis of the reaction: H2O + acylglycerol = a fatty acid + glycerol.

ABHD12, DAGLB, MGLL, ABHD6

GO:0047391

MF

alkylglycerophosphoethanolamine phosphodiesterase activity

Catalysis of the reaction: H2O + 1-alkyl-sn-glycero-3-phosphoethanolamine = ethanolamine + 1-alkyl-sn-glycerol 3-phosphate.

GNB1, ENPP2

GO:0047395

MF

glycerophosphoinositol glycerophosphodiesterase activity

Catalysis of the reaction: 1-(sn-glycero-3-phospho)-1D-myo-inositol + H(2)O = sn-glycerol 3-phosphate + myo-inositol + H(+).

GDE1

GO:0047429

MF

nucleoside-triphosphate diphosphatase activity

Catalysis of the reaction: H2O + a nucleoside triphosphate = diphosphate + a nucleotide.

ENPP3, ENPP1, DCTPP1, NUDT15

GO:0047442

MF

17-alpha-hydroxyprogesterone aldolase activity

Catalysis of the reaction: 17-alpha-hydroxyprogesterone = acetaldehyde + 4-androstene-3,17-dione.

CYP17A1

GO:0047451

MF

3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity

Catalysis of the reaction: (3R)-3-hydroxyoctanoyl-[acyl-carrier protein] = H2O + 2-octenoyl-[acyl-carrier protein].

FASN

GO:0047453

MF

ATP-dependent NAD(P)H-hydrate dehydratase activity

Catalysis of the reaction: (6S)-6beta-hydroxy-1,4,5,6-tetrahydronicotinamide adenine dinucleotide + ATP = ADP + 3 H(+) + NADH + phosphate.

CARKD

GO:0047484

BP

regulation of response to osmotic stress

Any process that modulates the rate or extent of the response to osmotic stress.

TRPV4

GO:0047485

MF

protein N-terminus binding

Interacting selectively and non-covalently with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.

HAX1, EXOC5, SDCBP, ACTN4, SYNGR3, NBN, PEX14, ZWINT, TGFB1, VWF, TP53, DCN, SCT, PARP1, ERCC2, GLRX, PPP1CC, SNCA, ID1, SMARCA4, STXBP1, RPS21, EIF5A, MAP2K1, RELA, HDAC1, GTF2H2, NPAT, ACOX1, TAF11, NCOA1, NIPBL, ERCC4, SMARCC1, EXOC4, PDLIM5, EXOC2, PHB2, FEZ1, PDCD10, TBL1XR1, KCNIP2, MORF4L1, SRRM2, NCOR2, NCOA3

GO:0047493

MF

ceramide cholinephosphotransferase activity

Catalysis of the reaction: CDP-choline + ceramide = CMP + H(+) + sphingomyelin.

SGMS1, SGMS2

GO:0047496

BP

vesicle transport along microtubule

The directed movement of a vesicle along a microtubule, mediated by motor proteins. This process begins with the attachment of a vesicle to a microtubule, and ends when the vesicle reaches its final destination.

DYNC1I1, HTT, VAMP7, RAB1A, CLN3, NDEL1, NDE1

GO:0047497

BP

mitochondrion transport along microtubule

The directed movement of a mitochondrion along a microtubule, mediated by motor proteins.

KIF1B, MAPT, LRPPRC, MAP1B, UXT

GO:0047498

MF

calcium-dependent phospholipase A2 activity

Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate. This reaction requires Ca2+.

PLA2G2A, PLA2G5, PLA2G4A, PLA2G12A

GO:0047499

MF

calcium-independent phospholipase A2 activity

Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate. This reaction does not require Ca2+.

PLA2G7, PNPLA8, PLA2G4C

GO:0047522

MF

15-oxoprostaglandin 13-oxidase activity

Catalysis of the reaction: (5Z)-(15S)-11-alpha-hydroxy-9,15-dioxoprostanoate + NAD(P)+ -> (5Z)-(15S)-11-alpha-hydroxy-9,15-dioxoprosta-13-enoate + NAD(P)H + H+.

PTGR1

GO:0047555

MF

3',5'-cyclic-GMP phosphodiesterase activity

Catalysis of the reaction: guanosine 3',5'-cyclic phosphate + H2O = guanosine 5'-phosphate.

PDE5A, PDE9A, PDE3B, PDE3A

GO:0047598

MF

7-dehydrocholesterol reductase activity

Catalysis of the reaction: cholesterol + NADP+ = cholesta-5,7-dien-3-beta-ol + NADPH + H+.

DHCR7

GO:0047617

MF

acyl-CoA hydrolase activity

Catalysis of the reaction: acyl-CoA + H2O = CoA + a carboxylate.

NUDT19, ACOT7, ACOT8, THEM4, ACOT4, ACOT13, ACOT9

GO:0047631

MF

ADP-ribose diphosphatase activity

Catalysis of the reaction: ADP-ribose + H2O = AMP + D-ribose 5-phosphate.

NUDT9, NUDT5

GO:0047638

MF

albendazole monooxygenase activity

Catalysis of the reaction: albendazole + H(+) + NADPH + O(2) = albendazole S-oxide + H(2)O + NADP(+).

CYP3A4

GO:0047676

MF

arachidonate-CoA ligase activity

Catalysis of the reaction: arachidonate + ATP + CoA = AMP + arachidonoyl-CoA + diphosphate + H(+).

ACSL4

GO:0047693

MF

ATP diphosphatase activity

Catalysis of the reaction: ATP + H2O = AMP + diphosphate.

NUDT1

GO:0047696

MF

beta-adrenergic receptor kinase activity

Catalysis of the reaction: ATP + beta-adrenergic receptor = ADP + phospho-beta-adrenergic receptor.

GRK5, ADRBK2, GRK6

GO:0047704

MF

bile-salt sulfotransferase activity

Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + taurolithocholate = adenosine 3',5'-bisphosphate + taurolithocholate sulfate.

SULT2A1

GO:0047710

MF

bis(5'-adenosyl)-triphosphatase activity

Catalysis of the reaction: P(1),P(3)-bis(5'-adenosyl) triphosphate + H(2)O = ADP + AMP + 2 H(+).

FHIT, ENPP4

GO:0047718

MF

indanol dehydrogenase activity

Catalysis of the reaction: indan-1-ol + NAD(P)+ = indanone + NAD(P)H + H+.

AKR1C3, AKR1C1

GO:0047750

MF

cholestenol delta-isomerase activity

Catalysis of the reaction: 5-alpha-cholest-7-en-3-beta-ol = 5-alpha-cholest-8-en-3-beta-ol.

EBP, EBPL

GO:0047751

MF

cholestenone 5-alpha-reductase activity

Catalysis of the reaction: 5alpha-cholestan-3-one + NADP(+) = cholest-4-en-3-one + H(+) + NADPH.

SRD5A1, SRD5A2

GO:0047756

MF

chondroitin 4-sulfotransferase activity

Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 4'-sulfate.

CHST11

GO:0047757

MF

chondroitin-glucuronate 5-epimerase activity

Catalysis of the reaction: chondroitin D-glucuronate = dermatan L-iduronate.

DSEL, DSE

GO:0047760

MF

butyrate-CoA ligase activity

Catalysis of the reaction: ATP + an acid + CoA = AMP + diphosphate + an acyl-CoA.

ACSM3, AACS

GO:0047783

MF

corticosterone 18-monooxygenase activity

Catalysis of the reaction: corticosterone + reduced adrenal ferredoxin + O2 = 18-hydroxycorticosterone + oxidized adrenal ferredoxin + H2O.

CYP11B1, CYP11B2

GO:0047787

MF

delta4-3-oxosteroid 5beta-reductase activity

Catalysis of the reactions: (1) 5beta-cholestan-3-one + NADP+ = cholest-4-en-3-one + NADPH + H+ and (2) 17,21-dihydroxy-5beta-pregnane-3,11,20-trione + NADP+ = cortisone + NADPH + H+.

AKR1C3

GO:0047840

MF

dCTP diphosphatase activity

Catalysis of the reaction: dCTP + H2O = dCMP + diphosphate.

DCTPP1

GO:0047844

MF

deoxycytidine deaminase activity

Catalysis of the reaction: deoxycytidine + H2O = deoxyuridine + NH3.

APOBEC3G, APOBEC3B

GO:0047860

MF

diiodophenylpyruvate reductase activity

Catalysis of the reaction: 3-(3,5-diiodo-4-hydroxyphenyl)lactate + NAD(+) = 3-(3,5-diiodo-4-hydroxyphenyl)pyruvate + H(+) + NADH.

MDH1

GO:0047865

MF

dimethylglycine dehydrogenase activity

Catalysis of the reaction: N,N-dimethylglycine + electron-transfer flavoprotein + H2O = sarcosine + formaldehyde + reduced electron-transfer flavoprotein.

DMGDH

GO:0047888

MF

fatty acid peroxidase activity

Catalysis of the reaction: 2 H(2)O(2) + H(+) + palmitate = CO(2) + 3 H(2)O + pentadecanal.

CYGB

GO:0047915

MF

ganglioside galactosyltransferase activity

Catalysis of the reaction: UDP-galactose + N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-1,4-beta-D-glucosyl-N-acylsphingosine = UDP + D-galactosyl-1,3-beta-N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosyl-N-acylsphingosine.

B3GALT4

GO:0047936

MF

glucose 1-dehydrogenase [NAD(P)] activity

Catalysis of the reaction: beta-D-glucose + NAD(P)+ = D-glucono-1,5-lactone + NAD(P)H.

H6PD

GO:0047977

MF

hepoxilin-epoxide hydrolase activity

Catalysis of the reaction: (5Z,9E,14Z)-(8x,11R,12S)-11,12-epoxy-8-hydroxyicosa-5,9,14-trienoate + H2O = (5Z,9E,14Z)-(8x,11x,12S)-8,11,12-trihydroxyicosa-5,9,14-trienoate.

ALOX15

GO:0047982

MF

homocysteine desulfhydrase activity

Catalysis of the reaction: L-homocysteine + H2O = sulfide + NH3 + 2-oxobutanoate.

CTH

GO:0047988

MF

hydroxyacid-oxoacid transhydrogenase activity

Catalysis of the reaction: (S)-3-hydroxybutanoate + 2-oxoglutarate = acetoacetate + (R)-2-hydroxyglutarate.

ADHFE1

GO:0048002

BP

antigen processing and presentation of peptide antigen

The process in which an antigen-presenting cell expresses peptide antigen in association with an MHC protein complex on its cell surface, including proteolysis and transport steps for the peptide antigen both prior to and following assembly with the MHC protein complex. The peptide antigen is typically, but not always, processed from an endogenous or exogenous protein.

CTSS, SLC11A1

GO:0048006

BP

antigen processing and presentation, endogenous lipid antigen via MHC class Ib

The process in which an antigen-presenting cell expresses lipid antigen of endogenous origin in association with an MHC class Ib protein complex on its cell surface. Class Ib here refers to non-classical class I molecules, such as those of the CD1 family.

CD1D

GO:0048007

BP

antigen processing and presentation, exogenous lipid antigen via MHC class Ib

The process in which an antigen-presenting cell expresses lipid antigen of exogenous origin in association with an MHC class Ib protein complex on its cell surface. Class Ib here refers to non-classical class I molecules, such as those of the CD1 family.

AP3D1, CD1D

GO:0048008

BP

platelet-derived growth factor receptor signaling pathway

The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands.

PIK3C2A, NRP1, JAK2, ZFAND5, PLAT, PDGFB, PDGFA, PDGFRB, BCR, PDGFRA, IQGAP1, PTEN, PTPN11, PTPRJ, MYO1E, GAB1, RAPGEF1, ARID5B, CSRNP1, PDGFD, TXNIP, PDGFC

GO:0048009

BP

insulin-like growth factor receptor signaling pathway

The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands.

IGF1, IGF1R, GHR, IGF2R, PIK3R1, AKT1, IRS1, TSC2, GRB10, GIGYF2, PLCB1, CRIM1

GO:0048010

BP

vascular endothelial growth factor receptor signaling pathway

Any series of molecular signals initiated by the binding of an extracellular ligand to a vascular endothelial growth factor receptor (VEGFR) located on the surface of the receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription.

NRP1, MAPK13, NRP2, ROCK2, HSPB1, CYBB, ITGB3, FYN, ITGAV, HSP90AA1, CCL2, VAV1, VEGFA, NCF2, PIK3R1, FLT4, PIK3CA, PIK3CB, MAPKAPK2, PGF, VEGFB, VEGFC, ACTB, CDC42, RHOA, RAC1, ACTG1, SHC2, PTK2, FOXC1, PAK2, BMPR2, NCF4, PRKD1, SHB, MAPK14, CYFIP1, SULF1, ABI1, ELMO1, CYFIP2, PRKD2, VAV3, WASF2

GO:0048011

BP

neurotrophin TRK receptor signaling pathway

A series of molecular signals initiated by the binding of a neurotrophin to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.

NGF, RAF1, NTRK1, NGFR, PTPN11, SOS1, DDIT4

GO:0048012

BP

hepatocyte growth factor receptor signaling pathway

The series of molecular signals generated as a consequence of the hepatocyte growth factor receptor binding to one of its physiological ligands.

NRP1, MET, HGF, MST1, SIRT2, MUC20

GO:0048013

BP

ephrin receptor signaling pathway

The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin.

WASL, SDCBP, ADAM10, ARPC2, ARPC3, ROCK2, PAK3, AP2A2, NTRK1, FYN, LYN, MMP2, MMP9, CHN1, MYL12A, EFNA1, RASA1, EPHA3, EPHB2, SDC2, PSEN2, EFNA4, EFNB2, EFNA5, AP2S1, EPHA5, EPHB4, EPHB1, EPHA4, ARPC4, ACTB, CDC42, ACTR3, ACTR2, RHOA, RAC1, AP2B1, ACTG1, PTK2, PTPN11, TIAM1, ARHGEF7, ITSN1, ARHGEF28, APH1B, ANKS1A, APH1A, AP2M1, EPHA6, VAV3, GIT1

GO:0048014

BP

Tie signaling pathway

The series of molecular signals generated as a consequence of a Tie protein (a receptor) binding to one of its physiological ligands (an angiopoietin).

ANGPT2, TEK, ANGPT1

GO:0048015

BP

phosphatidylinositol-mediated signaling

A series of molecular signals in which a cell uses a phosphatidylinositol-mediated signaling to convert a signal into a response. Phosphatidylinositols include phosphatidylinositol (PtdIns) and its phosphorylated derivatives.

PIK3CD, PIK3C2A, EREG, OGT, FGF18, FGF19, EGFR, PDGFB, NGF, PDGFA, ERBB2, NTRK1, IGF1, FYN, CSF1R, IGF1R, FGF2, PDGFRB, KIT, CD28, FGFR1, EZR, VAV1, PDGFRA, NPR3, KITLG, ZP3, FGF7, FGFR2, ERBB3, PTAFR, PIK3R1, FGF9, AKT1, BTC, CA8, IRS1, PIK3CA, PIK3CB, PTEN, RHOA, NCS1, GRB2, MUC5AC, NRG1, PTPN11, GAB1, ERBB4, RICTOR, TNRC6A, PIK3C3, FRS2, HBEGF, MAPKAP1, MLST8, TNRC6C, AGO4, EXOC1, PI4KB, KL, AGO2, TNRC6B, IRS2

GO:0048016

BP

inositol phosphate-mediated signaling

Any intracellular signal transduction in which the signal is passed on within the cell via an inositol phosphate. Includes production of the inositol phosphate, and downstream effectors that further transmit the signal within the cell. Inositol phosphates are a group of mono- to poly-phosphorylated inositols, and include inositol monophosphate (IP), inositol trisphosphate (IP3), inositol pentakisphosphate (IP5) and inositol hexaphosphate (IP6).

EDN1, EDN2, HRH1, ITPR2, ITPR3, INPP5A, ITPR1

GO:0048017

BP

inositol lipid-mediated signaling

A series of molecular signals in which a cell uses an inositol-containing lipid to convert a signal into a response. Inositol lipids include the phosphoinositides (phosphatidylinositol and its phosphorylated derivatives), ceramides containing inositol, and inositol glycolipids.

PLD1

GO:0048018

MF

receptor agonist activity

Interacts with receptors such that the proportion of receptors in the active form is increased.

GREM1, WNT2, VEGFA, WNT5A, WNT3, GAS6

GO:0048019

MF

receptor antagonist activity

Interacts with receptors to reduce the action of another ligand, the agonist.

DKK1, LRPAP1, ADH7, AGTR2, ESR2

GO:0048020

MF

CCR chemokine receptor binding

Interacting selectively and non-covalently with a CCR chemokine receptor.

CCL4, CCL20, CCL8

GO:0048022

BP

negative regulation of melanin biosynthetic process

Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of melanin.

WNT5A

GO:0048023

BP

positive regulation of melanin biosynthetic process

Any process that activates or increases the rate or extent of the chemical reactions and pathways resulting in the formation of melanin.

ZEB2

GO:0048024

BP

regulation of mRNA splicing, via spliceosome

Any process that modulates the frequency, rate or extent of mRNA splicing via a spliceosomal mechanism.

SRSF10, SON, TIA1, SRPK2, JMJD6, YTHDC1, SRPK1, CWC22

GO:0048025

BP

negative regulation of mRNA splicing, via spliceosome

Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism.

SAP18, SRSF10, HNRNPA2B1, PTBP1, RBMX, TRA2B, C1QBP, SRSF9, SRSF6, RNPS1

GO:0048026

BP

positive regulation of mRNA splicing, via spliceosome

Any process that activates or increases the rate or extent of mRNA splicing via a spliceosomal mechanism.

RBMX, TRA2B, DAZAP1, PRPF19, THRAP3

GO:0048027

MF

mRNA 5'-UTR binding

Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule.

IGF2BP3, DDX3X, RPS14, FMR1, LARP1, IGF2BP2

GO:0048029

MF

monosaccharide binding

Interacting selectively and non-covalently with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.

GPI, FBP1, TALDO1

GO:0048037

MF

cofactor binding

Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.

TYMS, ASNS, LMO2, TKT, SUCLG1, ME3

GO:0048038

MF

quinone binding

Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.

AOC2, NDUFS2, ETFDH, AOC3, HHIP, VKORC1

GO:0048039

MF

ubiquinone binding

Interacting selectively and non-covalently with ubiquinone, a quinone derivative with a tail of isoprene units.

SDHB, DHODH, ETFDH

GO:0048040

MF

UDP-glucuronate decarboxylase activity

Catalysis of the reaction: H(+) + UDP-alpha-D-glucuronate = CO(2) + UDP-alpha-D-xylose.

UXS1

GO:0048041

BP

focal adhesion assembly

The aggregation and bonding together of a set of components to form a focal adhesion, a complex of intracellular signaling and structural proteins that provides a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity.

RHOD, ARHGAP6, BCL2, ACTN1, ITGA2, ACTN2, ARHGEF7, CTTN, PTPRK, TRIP6, AJUBA, DLC1, SORBS1, TAOK2

GO:0048048

BP

embryonic eye morphogenesis

The process occurring in the embryo by which the anatomical structures of the post-embryonic eye are generated and organized.

AXIN1, FBN1, FBN2, ALDH1A3, MFAP2, FOXL2, EFEMP1

GO:0048050

BP

post-embryonic eye morphogenesis

The process, occurring after embryonic development, by which the anatomical structures of the eye are generated and organized. The eye is the organ of sight.

FBN1, MFAP2, EFEMP1

GO:0048066

BP

developmental pigmentation

The developmental process that results in the deposition of coloring matter in an organism, tissue or cell.

BCL2L11, ZEB2, GNA11, PMEL, GNAQ, SLC45A2

GO:0048070

BP

regulation of developmental pigmentation

Any process that modulates the frequency, rate or extent of the developmental process that results in the deposition of coloring matter in an organism.

BCL2L11, KIT

GO:0048075

BP

positive regulation of eye pigmentation

Any process that activates or increases the frequency, rate or extent of establishment of a pattern of pigment in the eye of an organism.

HPS4

GO:0048087

BP

positive regulation of developmental pigmentation

Any process that increases the frequency, rate or extent of the developmental process that results in the deposition of coloring matter in an organism.

BAX

GO:0048096

BP

chromatin-mediated maintenance of transcription

Maintenance of transcription by remodelling of chromatin into an 'open configuration'. Once established, this regulation is mitotically stable and is maintained over many cell divisions. It is also heritable.

ARID1A, CHEK1, CTNNB1, ELOF1, ARID1B, SMARCD1, BAZ1B, KMT2B

GO:0048102

BP

autophagic cell death

A form of programmed cell death that is accompanied by the formation of autophagosomes. Autophagic cell death is characterized by lack of chromatin condensation and massive vacuolization of the cytoplasm, with little or no uptake by phagocytic cells.

LAMP1, CDKN1B, BNIP3, TP53INP1, SH3GLB1

GO:0048103

BP

somatic stem cell division

The self-renewing division of a somatic stem cell, a stem cell that can give rise to cell types of the body other than those of the germ-line.

FZD7, KIT, NOTCH1, ZFP36L2, TGFB2

GO:0048133

BP

male germ-line stem cell asymmetric division

The self-renewing division of a germline stem cell in the male gonad, to produce a daughter stem cell and a daughter germ cell, which will divide to form the male gametes.

ETV5, ZBTB16

GO:0048143

BP

astrocyte activation

A change in morphology and behavior of an astrocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor.

EGFR, MT1X

GO:0048144

BP

fibroblast proliferation

The multiplication or reproduction of fibroblast cells, resulting in the expansion of the fibroblast population.

AGT

GO:0048145

BP

regulation of fibroblast proliferation

Any process that modulates the frequency, rate or extent of multiplication or reproduction of fibroblast cells.

CREB1, CTNNB1

GO:0048146

BP

positive regulation of fibroblast proliferation

Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells.

EREG, NDUFS4, EGFR, AGT, MYC, PDGFB, TGFB1, FN1, ESR1, PDGFA, CD74, IGF1, JUN, S100A6, ANXA2, WNT2, PDGFRB, CDK4, MIF, CCNB1, FOSL2, PDGFRA, CCNA2, BTC, CDKN1A, WNT5A, PRKDC, CDK6, E2F1, GAS6, RNASEH2B, WAPL, CDC6, PDGFD, PDGFC, SPHK1, ZMIZ1

GO:0048147

BP

negative regulation of fibroblast proliferation

Any process that stops, prevents, or reduces the frequency, rate or extent of multiplication or reproduction of fibroblast cells.

NUPR1, MYC, FTH1, TP53, GSTP1, SKI, AGTR2, EMD, BAX, PMAIP1, MORC3, SFRP1, PAWR, DACH1

GO:0048148

BP

behavioral response to cocaine

Any process that results in a change in the behavior of an organism as a result of a cocaine stimulus.

DRD2, SNCA, ABAT, CDK5, SDK1, HOMER1

GO:0048149

BP

behavioral response to ethanol

Any process that results in a change in the behavior of an organism as a result of an ethanol stimulus.

DRD2, CHRNA7, USP46, EPS8, HDAC2

GO:0048156

MF

tau protein binding

Interacting selectively and non-covalently with tau protein. tau is a microtubule-associated protein, implicated in Alzheimer's disease, Down Syndrome and ALS.

APBB1, BIN1, APOE, S100B, HSP90AA1, SNCA, FKBP4, AATF, HDAC6

GO:0048160

BP

primary follicle stage

The stage in oogenesis when a single layer of cuboidal follicle cells surrounds the oocyte. The oocyte nucleus is large.

EREG

GO:0048167

BP

regulation of synaptic plasticity

A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers.

NCAM1, ITPKA, HRH1, PSEN1, CDK5, YWHAH, MEF2C, EIF4EBP2, NFATC4, CNTN4, CPEB3, FGF14, SYNGAP1, PLK2, LZTS1

GO:0048168

BP

regulation of neuronal synaptic plasticity

A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers.

APOE, S100B, EGR2, STAR, DBN1, NSMF, ARC

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